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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

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perform basic research in molecular biology

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offer vital services to scientists in the member states

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scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_formula:"DGD" AND natural_source_ncbi_code:"3218"

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EMD-35018

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Cryo-EM structure of PpPSI-L

Release date: Aug. 2, 2023
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 8htu
Q-score: 0.55

Sun H, Shang H, Pan X, Li M

Nat Plants (2023) 9 pp. 1347-1358 [ DOI: doi:10.1038/s41477-023-01463-4 Pubmed: 37474782 ]

Sample:

Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Physcomitrium patens)
Photosystem i reaction center subunit viii (4 kDa, Protein from Physcomitrium patens)
Psi subunit v (23 kDa, Protein from Physcomitrium patens)
Photosystem i subunit o (15 kDa, Protein from Physcomitrium patens)
Photosystem i reaction center subunit iii (26 kDa, Protein from Physcomitrium patens)
Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Physcomitrium patens)
Photosystem i subunit x (13 kDa, Protein from Physcomitrium patens)
(3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
(1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
Water (18 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (33 kDa, Protein from Physcomitrium patens)
Phylloquinone (450 Da, Ligand)
Photosystem i from physcomitrium patens (Complex from Physcomitrium patens)
Photosystem i reaction center subunit iv, chloroplastic (13 kDa, Protein from Physcomitrium patens)
Beta-carotene (536 Da, Ligand)
Photosystem i reaction center subunit xii (3 kDa, Protein from Physcomitrium patens)
Photosystem i reaction center subunit vi, chloroplastic (14 kDa, Protein from Physcomitrium patens)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (34 kDa, Protein from Physcomitrium patens)
Photosystem i reaction center subunit ii, chloroplastic (22 kDa, Protein from Physcomitrium patens)
Photosystem i iron-sulfur center (8 kDa, Protein from Physcomitrium patens)
(3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
Photosystem i reaction center subunit v, chloroplastic (16 kDa, Protein from Physcomitrium patens)
Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Physcomitrium patens)
Chlorophyll a-b binding protein, chloroplastic (28 kDa, Protein from Physcomitrium patens)
Chlorophyll a (893 Da, Ligand)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
Photosystem i reaction center subunit ix (4 kDa, Protein from Physcomitrium patens)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Physcomitrium patens)
Dodecyl-beta-d-maltoside (510 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (29 kDa, Protein from Physcomitrium patens)
Iron/sulfur cluster (351 Da, Ligand)
Chlorophyll b (907 Da, Ligand)

[Show more]

EMD-33401

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PSI-LHCI-LHCII-Lhcb9 supercomplex of Physcomitrella patens

Release date: April 26, 2023
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 7xqp
Q-score: 0.536

Zhang S, Tang K, Yan Q, Li X, Shen L, Wang W, He YK, Kuang T, Han G, Shen JR, Zhang X

Nat Plants (2023) 9 pp. 832-846 [ DOI: doi:10.1038/s41477-023-01401-4 Pubmed: 37095225 ]

Sample:

Photosystem i reaction center subunit viii (3 kDa, Protein from Physcomitrium patens)
Psae (6 kDa, Protein from Physcomitrium patens)
Psao (9 kDa, Protein from Physcomitrium patens)
(3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
(1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (24 kDa, Protein from Physcomitrium patens)
Psi subunit v (17 kDa, Protein from Physcomitrium patens)
Psak (8 kDa, Protein from Physcomitrium patens)
Phylloquinone (450 Da, Ligand)
Photosystem i iron-sulfur center (8 kDa, Protein from Physcomitrium patens)
Beta-carotene (536 Da, Ligand)
Photosystem i reaction center subunit xii (3 kDa, Protein from Physcomitrium patens)
Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Physcomitrium patens)
Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Physcomitrium patens)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Physcomitrium patens)
Chlorophyll a-b binding protein, chloroplastic (24 kDa, Protein from Physcomitrium patens)
(3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
Psah photosystem i reaction center subunit (10 kDa, Protein from Physcomitrium patens)
Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Physcomitrium patens)
Psi-f (17 kDa, Protein from Physcomitrium patens)
Dodecyl-alpha-d-maltoside (510 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (20 kDa, Protein from Physcomitrium patens)
Psi-g (10 kDa, Protein from Physcomitrium patens)
Chlorophyll a (893 Da, Ligand)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
Photosystem i reaction center subunit ix (4 kDa, Protein from Physcomitrium patens)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Physcomitrium patens)
Predicted protein psad (15 kDa, Protein from Physcomitrium patens)
Psi-lhci-lhcii-lhcb9 supercomplex of physcomitrella patens (Complex from Physcomitrium patens)
Iron/sulfur cluster (351 Da, Ligand)
Chlorophyll b (907 Da, Ligand)

[Show more]

EMD-23023

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The Structure of the moss PSI-LHCI reveals the evolution of the LHCI antenna

Release date: March 30, 2022
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7ksq
Q-score: 0.544

Gorski C, Riddle R, Toporik H, Da Z, Dobson Z, Williams D, Mazor Y

Nat Plants (2022) 8 pp. 307-316 [ Pubmed: 35190662 DOI: doi:10.1038/s41477-022-01099-w ]

Sample:

Photosystem i reaction center subunit viii (3 kDa, Protein from Physcomitrium patens)
Photosystem i reaction center subunit xii (3 kDa, Protein from Physcomitrium patens)
Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Physcomitrium patens)
Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Physcomitrium patens)
(3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Physcomitrium patens)
Water (18 Da, Ligand)
Psao (9 kDa, Protein from Physcomitrium patens)
Phylloquinone (450 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (20 kDa, Protein from Physcomitrium patens)
Photosystem i iron-sulfur center (8 kDa, Protein from Physcomitrium patens)
Beta-carotene (536 Da, Ligand)
Psi-g (9 kDa, Protein from Physcomitrium patens)
Psak (8 kDa, Protein from Physcomitrium patens)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Psae (7 kDa, Protein from Physcomitrium patens)
Psi (Complex from Physcomitrium patens)
Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Physcomitrium patens)
Chlorophyll a isomer (893 Da, Ligand)
Psi subunit v (16 kDa, Protein from Physcomitrium patens)
Psad (15 kDa, Protein from Physcomitrium patens)
Chlorophyll a (893 Da, Ligand)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
Photosystem i reaction center subunit ix (4 kDa, Protein from Physcomitrium patens)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Psah (9 kDa, Protein from Physcomitrium patens)
Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Physcomitrium patens)
Psi-f (17 kDa, Protein from Physcomitrium patens)
Dodecyl-beta-d-maltoside (510 Da, Ligand)
Iron/sulfur cluster (351 Da, Ligand)
Chlorophyll b (907 Da, Ligand)

[Show more]

EMD-23040

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The Structure of the moss PSI-LHCI reveals the evolution of the LHCI antenna

Release date: March 30, 2022
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7kux
Q-score: 0.546

Gorski C, Riddle R, Toporik H, Da Z, Dobson Z, Williams D, Mazor Y

Nat Plants (2022) 8 pp. 307-316 [ Pubmed: 35190662 DOI: doi:10.1038/s41477-022-01099-w ]

Sample:

Photosystem i reaction center subunit viii (3 kDa, Protein from Physcomitrium patens)
Photosystem i reaction center subunit xii (3 kDa, Protein from Physcomitrium patens)
Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Physcomitrium patens)
Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Physcomitrium patens)
(3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Physcomitrium patens)
Water (18 Da, Ligand)
Phylloquinone (450 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (20 kDa, Protein from Physcomitrium patens)
Photosystem i iron-sulfur center (8 kDa, Protein from Physcomitrium patens)
Beta-carotene (536 Da, Ligand)
Psi-g (9 kDa, Protein from Physcomitrium patens)
Psak (8 kDa, Protein from Physcomitrium patens)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Psae (7 kDa, Protein from Physcomitrium patens)
Psi (Complex from Physcomitrium patens)
Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Physcomitrium patens)
Chlorophyll a isomer (893 Da, Ligand)
Psi subunit v (16 kDa, Protein from Physcomitrium patens)
Psad (15 kDa, Protein from Physcomitrium patens)
Chlorophyll a (893 Da, Ligand)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
Photosystem i reaction center subunit ix (4 kDa, Protein from Physcomitrium patens)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Psah (9 kDa, Protein from Physcomitrium patens)
Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Physcomitrium patens)
Psi-f (17 kDa, Protein from Physcomitrium patens)
Dodecyl-beta-d-maltoside (510 Da, Ligand)
Iron/sulfur cluster (351 Da, Ligand)
Chlorophyll b (907 Da, Ligand)

[Show more]

EMD-0821

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PSI-LHCI Supercomplex from Physcometrella patens

Release date: Feb. 10, 2021
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 6l35
Q-score: 0.545

Yan Q, Zhao L, Wang W, Pi X, Han G, Wang J, Cheng L, He YK, Kuang T, Qin X, Sui SF, Shen JR

Cell Discov (2021) 7 pp. 10-10 [ DOI: doi:10.1038/s41421-021-00242-9 Pubmed: 33589616 ]

Sample:

Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Moss)
Photosystem i reaction center subunit ix (4 kDa, Protein from Moss)
(3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
Psi-lhci (Complex from Physcomitrella patens)
1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
Phylloquinone (450 Da, Ligand)
Psi-f (17 kDa, Protein from Moss)
Psi subunit v (16 kDa, Protein from Moss)
Beta-carotene (536 Da, Ligand)
Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Moss)
Psae (6 kDa, Protein from Moss)
Psak (7 kDa, Protein from Moss)
Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Moss)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
(3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
Photosystem i iron-sulfur center (8 kDa, Protein from Moss)
Chlorophyll a-b binding protein, chloroplastic (20 kDa, Protein from Moss)
Photosystem i reaction center subunit viii (3 kDa, Protein from Moss)
Chlorophyll a (893 Da, Ligand)
Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Moss)
Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Moss)
Psah photosystem i reaction center subunit (9 kDa, Protein from Moss)
Photosystem i reaction center subunit xii (3 kDa, Protein from Moss)
Chlorophyll b (907 Da, Ligand)
Predicted protein psad (15 kDa, Protein from Moss)
Iron/sulfur cluster (351 Da, Ligand)
Predicted protein psag (10 kDa, Protein from Moss)

[Show more]

Sort by: Download

Showing 1 - 5 of 5. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [5]

Format:

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Field: